Speaker
Olivier Burri
(EPFL)
Description
This workshop will provide hands-on demonstrations of non-linear image registration workflows essential for various applications in biomedical research (multi-modal imaging, thin slices alignment to 3D atlas, and cyclic IF).
We will showcase the use of imglib2-based tools such as BigWarp, Warpy, and ABBA, highlighting their capabilities in performing complex image registrations. Attendees will learn how to extract and apply transformation functions across different platforms, facilitating seamless integration with downstream analysis tools like QuPath (using Groovy) and python.
| Target audience | Beginner users, Intermediate users, Advanced users |
|---|---|
| Keywords | ImageJ, Fiji, QuPath, WSI, registration, elastix, BigWarp, BigDataViewer |
