23–25 Oct 2024
Milan, Italy
Europe/Rome timezone

Connecting software tools into reproducible workflows with CellProfiler plugins

25 Oct 2024, 09:45
1h 30m
Upper Egg Room - Small (Human Technopole)

Upper Egg Room - Small

Human Technopole

Speaker

Beth Cimini (Broad Institute)

Description

In this workshop, we will explore CellProfiler's options for interfacing with other open-source tools, including Cellpose, ImageJ, and ilastik. We will introduce resources on creating additional CellProfiler plugins, but focus will be on the use of existing interfaces and plugins. Basic CellProfiler comfort not 100% mandatory but strongly encouraged.

Target audience Intermediate users, Advanced users, Beginner developers, Intermediate developers
Keywords CellProfiler, Cellpose, ImageJ, ilastik, plugin

Presentation materials

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