Oct 23 – 25, 2024
Milan, Italy
Europe/Rome timezone

Multiplexed tissue imaging: tools and approaches

Oct 24, 2024, 9:45 AM
1h 30m
Upper Egg Room - Small (Human Technople)

Upper Egg Room - Small

Human Technople

Speakers

Agustin Corbat (SciLifeLab) Anna Klemm (SciLifeLab) Frederic Ballllosera Navarro (Stanford University) Jonas Windhager (SciLifeLab) Kristína Lidayová (SciLifeLab)

Description

In this workshop, we present computational tools, workflows and pipelines for the processing and analysis of multiplexed tissue imaging data. In the first part of the workshop, we discuss commonly used analysis strategies and present a set of existing pipelines for multiplexed image processing, including MCMICRO (Schapiro et al., 2022), Steinbock (Windhager et al., 2023) and PIPEX (https://github.com/CellProfiling/pipex). In the second part, we showcase selected analyses of spatially resolved single-cell data extracted from multiplexed tissue images in a hands-on fashion, demonstrating tools such as SpatialData (Marconato et al., 2024) and TissUUmaps (Pielawski et al., 2023). The workshop is intended to provide researchers with an overview of recent tools in the multiplexed imaging field, enabling them to choose a suitable approach for the analysis of their own multiplexed tissue imaging data.

Target audience Beginner users, Intermediate users
Keywords Multiplexed tissue imaging, spatial single-cell analysis

Primary author

Anna Klemm (SciLifeLab)

Co-authors

Agustin Corbat (SciLifeLab) Frederic Ballllosera Navarro (Stanford University) Jonas Windhager (SciLifeLab) Kristína Lidayová (SciLifeLab)

Presentation materials

There are no materials yet.